Supplements
- Large Scale Multiple Kernel Learning
- RASE: Recognition of alternatively Spliced Exons
- An automated combination of kernels for protein subcellular localization
- Large scale Hidden Semi-Markov SVMs
- A General and Efficient Multiple Kernel Learning Algorithm
- mGene: A Novel Discriminative Gene Finding System
- rgasp2
- Accurate Splice Site Detection in C. elegans
- Large Scale Genomic Sequence SVM Classifiers
- Accurate Splice Site Detection (Supplementary Material)
- New Methods for Splice Site Recognition
- Shogun
- KIRMES: Kernel-based Identification of Regulatory Modules in Euchromatic Sequences
- RNA Secondary Structure Prediction using Large Margin Methods
- Margin-based Prediction of Polymorphic Regions
- An Empirical Analysis of Domain Adaptation Algorithms for Genomic Sequence Analysis
- Tutorial on Support Vector Machines and Kernels for Computational Biology
- rQuant: Quantitative Detection of Alternative Transcripts with RNA-Seq Data
- PALMapper: Fast and Accurate Spliced Alignments of Sequence Read
- srm-eval
- mTiM: margin-based transcript mapping from RNA-seq
- hmsvmtoolbox
- rdiff
- Long-term availability of bioinformatics web services
- Amino Acid String Kernels
- Online Quantitative Transcriptome Analysis
- SAFT
- coffin
- MISSSL: Multiple Insert Size Strand-specific Library
- mSplicer
- Learning Interpretable SVMs for biological Sequence Analysis
- Bootstrapping the Alternative Splicing Annotation of Newly Sequenced Genomes
- POIM
- Optimal Spliced Alignments of Short Sequence Reads
- Transcript Normalization and Segmentation of Tiling Array Data
- Transfer Learning
- GFF tools
- sQuant: quantitatively deconvolving alternative RNA secondary structures
- Persistence and availability of web services in computational biology
- NMDtools
- Easysvm
- MiTie
- ARTS: Accurate Recognition of Transcription Starts in Human
- MMR
- NMD
- SplAdder
- mitbookstruct
- PALMA: mRNA to Genome Alignments using Large Margin Algorithms
- RNA Splicing in Kidney Renal Clear Cell Carcinoma
- rgasp3