rgasp2

The mGene, mGene graph and mTim submissions to RGASP2 where based on a combination of the following tools:

• Palmapper for RNA-seq read mapping
• mGene for full genome annotation based on genomic and RNA-seq features
• mTim for genome segmentation into exonic, intronic and intergenic regions
• SplAdder for generation of alternative transcript isoforms
• rQuant for quantification of transcript isoforms