252-0868-00L Digital Medicine II (Spring 2020)

Semester Spring Semester 2020
Lecturers Julia Vogt; Gunnar Rätsch; Natalie Davidson
Periodicity yearly block course
Language of instruction English

Abstract
Machine Learning (ML) methods have shown to have a profound impact in medical applications, where the great variety of tasks and data types enables us to get benefit of ML algorithms in many different ways. In this course we will review the most relevant methods and applications of ML in medicine, and work on practical projects to solve medical problems with the help of ML.

Objective
The course will start with a general introduction to ML, where we will cover supervised and unsupervised learning techniques, as for example classification and regression models, feature selection and preprocessing of data, clustering and dimensionality reduction techniques. After the introduction of the basic methodologies, we will continue with the most relevant applications of ML in medicine, as for example dealing with time series, medical notes and medical images.

Content
During the last few years, we have observed a rapid growth of Machine Learning (ML) in Medicine. ML methods have shown to have a profound impact in medical applications, where the great variety of tasks and data types enables us to get benefit of ML algorithms in many different ways. In this course we will review the most relevant methods and applications of ML in medicine, discuss the main challenges they present and their current technical solutions, and work on practical projects to solve medical problems with the help of ML.

Project Details

Due Date Topic Project Material Project Video Introduction
25.03.2020 Supervised Learning Project 1 Project 1 Intro
27.03.2020 Unsupervised Learning Project 2 Project 2 Intro
01.04.2020 Time Series Project 3 (Released 27.3) Project 3 Intro
03.04.2020 Splice Site Prediction Project 4 (Released 30.3) Project 4 Intro

Course Overview

Date Topic Course Material Recordings
23.03.2020 Lecture: Introduction Lecture Slides 01 Link to Video Lecture 01
Exercise: Python Introduction Exercise Slides 01 Link to Exercise Session 01
24.03.2020 Lecture: Supervised Learning/Linear Classifiers Lecture Slides 02 Link to Video Lecture 02
Exercise: Project 1 Assigned + Project Work
25.03.2020 Lecture: Nonlinear Models Lecture Slides 03 Link to Video Lecture 03 on Moodle
Exercise: Project 1 Work + Project Presentations
26.03.2020 Lecture: Unsupervised Learning Lecture Slides 04 Link to Video Lecture 04 on Moodle
Exercise: Project 2 Assigned + Project Work
27.03.2020 Lecture: Advanced Topics Lecture Slides 05 Link to Video Lecture 05 on Moodle
Exercise: Project 2 Work + Project Presentations
30.03.2020 Lecture: Time Series Lecture Slides 06 Link to Video Lecture 06
Exercise: Project 3 Assigned + Project Work
31.03.2020 Lecture: Image Analysis Lecture Slides 07 Link to Video Lecture 07
Exercise: Project Work
01.04.2020 Lecture: Genomics Lecture Slides 08 Link to Video Lecture 08
Exercise: Project 4 Assigned + Project Presentations
02.04.2020 Lecture: Ethics
Exercise: Project Work
03.04.2020 Lecture: Privacy + NLP Lecture Slides 10 Link to Video Lecture 10 on Moodle
Exercise: Project 4 Work + Project Presentations