252-0868-00L Digital Medicine II (Spring 2020)
Semester | Spring Semester 2020 |
Lecturers | Julia Vogt; Gunnar Rätsch; Natalie Davidson |
Periodicity | yearly block course |
Language of instruction | English |
Abstract
Machine Learning (ML) methods have shown to have a profound impact in medical applications, where the great variety of tasks and data types enables us to get benefit of ML algorithms in many different ways. In this course we will review the most relevant methods and applications of ML in medicine, and work on practical projects to solve medical problems with the help of ML.
Objective
The course will start with a general introduction to ML, where we will cover supervised and unsupervised learning techniques, as for example classification and regression models, feature selection and preprocessing of data, clustering and dimensionality reduction techniques. After the introduction of the basic methodologies, we will continue with the most relevant applications of ML in medicine, as for example dealing with time series, medical notes and medical images.
Content
During the last few years, we have observed a rapid growth of Machine Learning (ML) in Medicine. ML methods have shown to have a profound impact in medical applications, where the great variety of tasks and data types enables us to get benefit of ML algorithms in many different ways. In this course we will review the most relevant methods and applications of ML in medicine, discuss the main challenges they present and their current technical solutions, and work on practical projects to solve medical problems with the help of ML.
Project Details
Due Date | Topic | Project Material | Project Video Introduction |
25.03.2020 | Supervised Learning | Project 1 | Project 1 Intro |
27.03.2020 | Unsupervised Learning | Project 2 | Project 2 Intro |
01.04.2020 | Time Series | Project 3 (Released 27.3) | Project 3 Intro |
03.04.2020 | Splice Site Prediction | Project 4 (Released 30.3) | Project 4 Intro |
Course Overview
Date | Topic | Course Material | Recordings |
---|---|---|---|
23.03.2020 | Lecture: Introduction | Lecture Slides 01 | Link to Video Lecture 01 |
Exercise: Python Introduction | Exercise Slides 01 | Link to Exercise Session 01 | |
24.03.2020 | Lecture: Supervised Learning/Linear Classifiers | Lecture Slides 02 | Link to Video Lecture 02 |
Exercise: Project 1 Assigned + Project Work | |||
25.03.2020 | Lecture: Nonlinear Models | Lecture Slides 03 | Link to Video Lecture 03 on Moodle |
Exercise: Project 1 Work + Project Presentations | |||
26.03.2020 | Lecture: Unsupervised Learning | Lecture Slides 04 | Link to Video Lecture 04 on Moodle |
Exercise: Project 2 Assigned + Project Work | |||
27.03.2020 | Lecture: Advanced Topics | Lecture Slides 05 | Link to Video Lecture 05 on Moodle |
Exercise: Project 2 Work + Project Presentations | |||
30.03.2020 | Lecture: Time Series | Lecture Slides 06 | Link to Video Lecture 06 |
Exercise: Project 3 Assigned + Project Work | |||
31.03.2020 | Lecture: Image Analysis | Lecture Slides 07 | Link to Video Lecture 07 |
Exercise: Project Work | |||
01.04.2020 | Lecture: Genomics | Lecture Slides 08 | Link to Video Lecture 08 |
Exercise: Project 4 Assigned + Project Presentations | |||
02.04.2020 | Lecture: Ethics | ||
Exercise: Project Work | |||
03.04.2020 | Lecture: Privacy + NLP | Lecture Slides 10 | Link to Video Lecture 10 on Moodle |
Exercise: Project 4 Work + Project Presentations |