Vipin T. Sreedharan

Vipin T. Sreedharan
Biomedical Informatics Group
Room: Z-695
Tel: +1 646 888 3395
Email:
Mailing Address: MSKCC – Computational Biology Center
1275 York Avenue, Box # 357
New York, NY 10065
Express Mail/Street Address: Zuckerman Research Center
415-417 East 68th Street – 6th Floor (Z-677)
New York, NY 10065

 

Biography:
 

 
Selected Publications:
 

  1. Sreedharan VT, Schultheiss SJ, Jean G, Kahles A, Bohnert R, Drewe P, Mudrakarta P, Görnitz N, Zeller G, Rätsch G. Oqtans: The RNA-seq Workbench in the Cloud for Complete and Reproducible Quantitative Transcriptome Analysis. Bioinformatics. 2014 Jan 11, [Epub ahead of print] PMID: 24413671
  2. Behr J, Kahles A, Zhong Y, Sreedharan VT, Drewe P, Rätsch G. MITIE: Simultaneous RNA-Seq-based transcript identification and quantification in multiple samples. Bioinformatics. 2013 Oct 15, PMID: 23980025
  3. Kulemzina I, Schumacher MR, Verma V, Reiter J, Metzler J, Failla AV, Lanz C, Sreedharan VT, Rätsch G, Ivanov D. Cohesin rings devoid of Scc3 and Pds5 maintain their stable association with the DNA. PLoS Genet. 2012 Aug 9, PMID: 22912589
  4. Gan X, Stegle O, Behr J, Steffen JG, Drewe P, Hildebrand KL, Lyngsoe R, Schultheiss SJ, Osborne EJ, Sreedharan VT, Kahles A, Bohnert R, Jean G, Derwent P, Kersey P, Belfield EJ, Harberd NP, Kemen E, Toomajian C, Kover PX, Clark RM, Rätsch G, Mott R. Multiple reference genomes and transcriptomes for Arabidopsis thaliana. Nature. 2011 Aug 28, PMID: 21874022
  5. Spencer WC, Zeller G, Watson JD, Henz SR, Watkins KL, McWhirter RD, Petersen S, Sreedharan VT, Widmer C, Jo J, Reinke V, Petrella L, Strome S, Von Stetina SE, Katz M, Shaham S, Rätsch G, Miller DM 3rd. A spatial and temporal map of C. elegans gene expression. Genome Res. 2011 Feb, PMID: 21177967