Andre Kahles

Andre Kahles, Dr.
Biomedical Informatics Group
Room: CAB F52.2
Tel: +41 44 632 9067
Email:
Mailing Address: ETH Zurich
Department of Computer Science
CAB F52.2
Universitätsstrasse 6
8092 Zurich, Switzerland

Biography:

 

Selected Publications:

 

  1. Kahles A, Ong CS, Zhong Y, Rätsch G. SplAdder: identification, quantification and testing of alternative splicing events from RNA-Seq data. Bioinformatics, 32(12):1840-7, 2016. PubmedPDF.
  2. Kahles A, Behr J, Rätsch G. MMR: a tool for read multi-mapper resolution. Bioinformatics, 32(5):770-2, 2016. Pubmed, PDF.
  3. Behr J, A Kahles, Y Zhong, VT Sreedharan, P Drewe, G Rätsch. MiTie: Simultaneous RNA-Seq-based transcript identification and quantification in multiple samples. Bioinformatics, 29(20):2529-38, 2013. PubmedPDF.
  4. Drewe P, O Stegle, L Hartmann L, A Kahles, R Bohnert, A Wachter, K Borgwardt, G Rätsch. Accurate detection of differential RNA processing. Nucleic Acids Res., 41(10):5189-98, 2013. PubmedPDF.
  5. Drechsel G*, A Kahles*, AK Kesarwani, E Stauffer, J Behr, P Drewe, G Rätsch, A Wachter. Nonsense-mediated decay of alternative precursor mRNA splicing variants is a major determinant of the Arabidopsis steady state transcriptome. Plant Cell, 25(10):3726-42, 2013. PubmedPDF.
  6. Engström PG, T Steijger, B Sipos, GR Grant, A Kahles, RGASP Consortium, G Rätsch, N Goldman, TJ Hubbard, J Harrow, R Guigo, P Bertone. Systematic evaluation of spliced aligners for RNA-seq. Nature Methods, Epub November 4th, 2013. PubmedPDF.
  7. Gan X, O Stegle O, J Behr, JG Steffen, P Drewe, KL Hildebrand, R Lyngsoe, SJ Schultheiss, EJ Osborne, VT Sreedharan, A Kahles, R Bohnert, G Jean, P Derwent, P Kersey, EJ Belfield, NP Harberd, E Kemen, C Toomajian, PX Kover, RM Clark, G Rätsch, R Mott. Multiple reference genomes and transcriptomes for A. thalianaNature, 477(7365):419-23, 2011. PubmedPDF.